Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEKFGIGKAHSKIILMGEHSVVYGYPAIAIPLKNIEVTCLIEEAPQ---LI--AL-D--M---------T-------D-------PLSTAIFA----ALDY----LG-KTSSKIAYHIESQVPERRGMGSSAAVAIAAIRAVFDYF--DEDLEADLLECLVNRAEMIAHSNPSGLDAKTCLSEN---TIKFIRN--IGFSTVPMH----LNAYLVIADTGIHGHTKEA----V------------------------------------DKVKSSGE-------------------AV-------------------------------LP-----------------FLKELG------YLAEASEDAIHKS-------DSKQLGSLMTKAHQSLKQ-LGVSSLEADHLVEVAISCGALGAKMSGGGLGGCIIALVKEKR--EAERLSQQLEREGAVNTWTEKV |
| 3V2U Chain:C ((38-485)) | ---PDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDM-LCAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALAT-IRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLT |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3V2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -106284 for 2235 contacts (-47.6/contact) +
2D Compatibility (PS) -29158 + (NN) -5725 + (LL) 712
1D Compatibility (HY) -15600 + (ID) 2300
Total energy: -158355.0 ( -70.85 by residue)
QMean score : 0.376
|
|
|