Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKIILGILSLLSVVTLVACGSSDKQLQDKVEKKGKLVLAVSPDYAPFEFKALVNGKDKVVGADIELAQAIADELHVKLEVSPMSFDNVLSSLQTGKADMAISGLSYTKERAKVYDFSKPYYTTENAVLVRKSDLGKYTSIESLKGKKIAVQKGSIEEGVSKKSFK-NSHVVSLTAMGEAISELKSGKVEAVDLEKPVAEGYLAQNPD--LVLAKFALKTGEGDAKAVALPKDSGKMLKTVNKVIKRLEKEDKYKVYISDAAKLTGNQVE |
2PVU Chain:A ((38-265)) | -------------------------------GATKKKVVVGTDAAFAPFEYMQ----KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS--PVKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNF-ASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLDR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PVU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68575 for 1854 contacts (-37.0/contact) +
2D Compatibility (PS) -24424 + (NN) -6598 + (LL) 2436
1D Compatibility (HY) -15200 + (ID) 3250
Total energy: -115611.0 ( -62.36 by residue)
QMean score : 0.513
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