Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN----WWGNGGDWAASAASAGYTVG-----TQPRVGSIVCWTDGSY---GHVAYVTAVDPVTNKIQVLESNYAGH------QWIDNYRGWFDPQNTATPGVVSYIYPN---
4CT3 Chain:A ((2-165))
AKTQAEINKRLDAYAKGTVD--------------SPYRVKKATSYDPSFGVMEAGAIDADGYYHAQQDL-ITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGN-TSTFTILEQNWNGYANKKPTKRVDNYYG-----------LTHFIEIPVKA
General information:
TITO was launched using:
RESULT:
Template:
4CT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53209 for 1052 contacts (-50.6/contact) +
2D Compatibility (PS) -15471 + (NN) -7373 + (LL) 1088
1D Compatibility (HY) -4800 + (ID) 1750
Total energy: -81515.0 ( -77.49 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_4CT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CT3-query.scw
PDB file :
Tito_Scwrl_4CT3.pdb
: