Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-YSFEELLATMTLITAAEIEDKIDSNQDFVLFIGRISCPFCHLFVPKIVEVADEDEFELFHLDSEDFDHWTANKEFRNKYDIPTVPGLMVVKNGTIKVKCDSKMTKEEIREFIG-
1ZMA Chain:A ((1-118))
SNAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAGL
General information:
TITO was launched using:
RESULT:
Template:
1ZMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97527 for 871 contacts (-112.0/contact) +
2D Compatibility (PS) -12730 + (NN) -5706 + (LL) 0
1D Compatibility (HY) -6400 + (ID) 1750
Total energy: -124113.0 ( -142.49 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1ZMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZMA-query.scw
PDB file :
Tito_Scwrl_1ZMA.pdb
: