Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
5BYU Chain:A ((6-133))
----------EINKIIHKKTFDIAWGDMDALGHVNNARYFDYFQEARIDWLRE-LDIKMT-GQTGPVVIHVACTFLKPIVYPATVTIHSKVNSLGNSSMIMDHDLYQE----ETLMAQGVSKIVWIDYTQNKSVPLPDIIRNLV-------
General information:
TITO was launched using:
RESULT:
Template:
5BYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92589 for 892 contacts (-103.8/contact) +
2D Compatibility (PS) -13863 + (NN) -4543 + (LL) 1064
1D Compatibility (HY) -7200 + (ID) 1600
Total energy: -118731.0 ( -133.11 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_5BYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BYU-query.scw
PDB file :
Tito_Scwrl_5BYU.pdb
: