Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEFPYVYLDATYLNVRNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEGVRDRLAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ |
4XZZ Chain:A ((24-339)) | LNASDRLLEIMRLYQKQG---------LEMVGQKLDSYLADKSFWAEELQNKDTDFGYYQNKQFLFVANKSKP-SLEFYEIENN---------MLKKINSSKALVGSK---KGDKTLEGDLATPIGVYRITQKLE------RLDQYYGVLAFVT----NYPNLYDTL---KKRTGHG-------IWVHGMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGE-----------------KAFLITYED----------------KFFPSTKEELSMILSSLFQWKEAWAR-----GDFERYMRFYNPNFTRYDGMK--FNAFKEYKKRVFAK--------NEKKNIAFSS--INVIPYPNSQNKRLFYVVFDQDYKAYQHNKLSYSSNSQKELYIEIENNQVSIIMEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XZZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8568 for 2407 contacts (-3.6/contact) +
2D Compatibility (PS) -33304 + (NN) -1739 + (LL) 7728
1D Compatibility (HY) -10400 + (ID) 3050
Total energy: -49333.0 ( -20.50 by residue)
QMean score : 0.189
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