Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHR-RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVST-VSHADADCFVCVFLSHGEGNHIYAYDA-KIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASM-LTKKLHFFPKSN
1CP3 Chain:A ((35-277))
-----------NSYKMDY-PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKED-HSKRSSFVCVLLSHGEEGIIFGTN-GPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELD--------------------CGIEH----KIPVDADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVS-MLTKELYFYH---
General information:
TITO was launched using:
RESULT:
Template:
1CP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155415 for 1830 contacts (-84.9/contact) +
2D Compatibility (PS) -24171 + (NN) -6182 + (LL) 2936
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -207932.0 ( -113.62 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1CP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CP3-query.scw
PDB file :
Tito_Scwrl_1CP3.pdb
: