Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER-GYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSF--------S-GVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPY---GLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
4EYB Chain:A ((48-269))
-----------------------DLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKV--FYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKL------------
General information:
TITO was launched using:
RESULT:
Template:
4EYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73128 for 1877 contacts (-39.0/contact) +
2D Compatibility (PS) -23251 + (NN) -12094 + (LL) 2564
1D Compatibility (HY) -11600 + (ID) 3650
Total energy: -121159.0 ( -64.55 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_4EYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EYB-query.scw
PDB file :
Tito_Scwrl_4EYB.pdb
: