Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
3AYU Chain:A ((1-166))
YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGKGVGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYT--KNFRLSQDDIKGIQELYGASP-----
General information:
TITO was launched using:
RESULT:
Template:
3AYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72412 for 1293 contacts (-56.0/contact) +
2D Compatibility (PS) -18190 + (NN) -13799 + (LL) -96
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -124497.0 ( -96.29 by residue)
QMean score : 0.805
(partial model without unconserved sides chains):
PDB file :
Tito_3AYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AYU-query.scw
PDB file :
Tito_Scwrl_3AYU.pdb
: