Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAEPDPSHPLETQAGKVQEAQDSDSDSEGGAAGGEADMDFLRNLFSQTLSLGSQKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELY--PGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAP-LSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKELEDLVRREHASIDAQSGAGVPNPSTSASPKKSPPPAKDEARTTEREKPQ |
| 1YC5 Chain:A ((2-245)) | --------------------------------------------------------------KMKEFLDLLNE--SRLTVTLTGAGISTPSGIPDF-------------------QNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCV--RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPF--------------------DDIATLKYNMDVVEFARRVMEEGGI---------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189994 for 1939 contacts (-98.0/contact) +
2D Compatibility (PS) -24040 + (NN) -5260 + (LL) 5728
1D Compatibility (HY) -15200 + (ID) 3750
Total energy: -232516.0 ( -119.92 by residue)
QMean score : 0.369
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