Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ
4AVI Chain:B ((1-158))
---------------------FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT-------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4AVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136570 for 1229 contacts (-111.1/contact) +
2D Compatibility (PS) -17223 + (NN) -10511 + (LL) 7492
1D Compatibility (HY) -23200 + (ID) 7900
Total energy: -187912.0 ( -152.90 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_4AVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AVI-query.scw
PDB file :
Tito_Scwrl_4AVI.pdb
: