Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNPFHASCWNTSAELLNKSWNKEFAYQTASVVDTVILPSMIGIICSTGLVGNILIVFTIIRSRKK-TVPDIYICNLAVADLVHIVGMPFLIHQWARGGEWVFGGPLCTIITSLDTCNQFACSAIMTVMSVDRYFALVQPFRLTRWRTRYKTIRINLGLWAASFILALPVWVYSKVIKFKDGVESCAFDLTSP--DDVLWYTLYLTITTFFFPLPLILVCYILI---LCYTWEMYQ-----------------------QNKDARCCNPSVPKQRVM--------KLTKMVLVLVVVFILSAAPYHVIQLVNLQMEQP---------TLAFYVGYYLSICLSYASSSINPFLYILLSGNFQKRLPQIQRRATEKEINNMGNTLKSHF |
| 4XNV Chain:A ((38-382)) | ----SFKCALTKTGF-----------------QFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKK-NAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -230342 for 2135 contacts (-107.9/contact) +
2D Compatibility (PS) -29708 + (NN) -1818 + (LL) 3216
1D Compatibility (HY) -30800 + (ID) 3950
Total energy: -293402.0 ( -137.42 by residue)
QMean score : 0.236
|
|
|