Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTLVSFFSFLSKPL-----------------IMLLSNSSWRLSQPSFLLVGIPGLEESQHWIALPLGILYLLALVGNVTILFIIWMDPSLHQ-SMYLFLSMLAAIDLVLASS-----TAPKALAVLLVHAHEIGYIVCLI----------QMFFIHAFSSMESGV--LVAMALDCYVAICHPL---------HHSTILHPGVIGCIGMVVLVRGLLLL--IPFPILLGKLIFCQATI----------------------IGHAYCEHMAVV---KLACSETTVNRAYGLTMALLVIGLDVLAIG-------VSYAHILQAVLKVPGSEARLKAFSTCGSHICVILVFYVPGI--------FSFLTHRFGHHVP--------HHVHVLLATWYLLMPPALNPL----------VYGVKTQQIRQRVLRVFTQKD--------- |
| 4XGC Chain:D ((5-457)) | DRELVSIRRFLKERLQRDYTTLRGYAKERSNVRLLLQRTAEMGESNSLLLLGPRGSGKTTLINSVLADLLPNKSFGEN---TLIVHLDGNLHTDDRVALKSITVQMQLENAADGKVFGSFAENLAFLLQCLKSKSVIFILEEFDLFCAHHNQTLLYNLFDVSQSAQAPICVLGVTCRLDVIELLEKRVKSRFSHRQVFLFPSLRRFEDYVDLCRDLLSLPTGNSLLLAAEKIYNLQNIQSGALYFSRNHFDPGEYGFSPRLRDAWNKQICKVLATQQARSTLQALHDFDISEAYLKNFLFRLVAHLRPQSPHITAEKMAAVGSQFEGDDKIELLCGLSVLELCLIIAIKHHSQIYDRDSFNFEIIYARFSKFAKVSTTMQAVERSIVLKAFEHLRIAELIMPLTKVQKEFEMHKLALTYSQIHHCMQRYQALPTEVAQWAQSS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -334669 for 2212 contacts (-151.3/contact) +
2D Compatibility (PS) -34512 + (NN) -15706 + (LL) 448
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -401839.0 ( -181.66 by residue)
QMean score : 0.246
|
|
|