Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIIYKQGITFLQKENNNTIHLNTMFFLSPAETHQRMAAENHSFVTKFILVGLTEKSELQLPLF--LVFLGIYVVTVLGNLGMITLIGLSSHLHTPMYCFLSSLSFIDFCHSTVIT-PKMLVNFVTEKNIISY-------------PECMTQLYFFLVFAIAECHMLAAMAYDGYVAICSPLLYSIIISNKACFSLILVVYVIGLIC--ASAHIGCMFRVQFCKFDVI-NHYFCDLISILKLSCSSTYINE---LLILIFSGINILVPSL--TILSSYIFIIASI--------------------------LRIRYTEGRSKAFSTCSSHISAVSVFFGSAAFMYLQPSSVSSMDQGKVSSVFYTIVVPMLNPLIYSLRNKDVHVALKKTLGKRTFL |
4L9B Chain:A ((2-393)) | ---VLKGINFP----------------ENEASILDLAMQNRSGVLDGMTIDILNTTSNQLALFHGTAVLQGYGIEITGAPDVLVDTTGQSN-ETMLLCLTIDLNQVNVPSGTAVDYKQIRLEFLDVPTLLKQYWRDHSLHDLIDPRRVISMPLYWITFGQTGTTPLYEQIKSNYIDNSGNPAYGIAARCENFNHFINKVAVQSIPINGVANRPVSSTASQLTNYKVWRNPYLCSQDPRDKFAPDNLVIEEDGIYRIDISGSINIANYTFPARVGGRYFQIVCARNSSANNLAEFGAEQHLPPSGVWTRRVLVGEYTAGMT---EQAFSSVATISLFKGDNFFLQFETGTNTSRDS--AYNNGYGTSGTHLRNFSYTLERVG-DLNGTAYYDNGTF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L9B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -306926 for 2380 contacts (-129.0/contact) +
2D Compatibility (PS) -33786 + (NN) 8709 + (LL) 2536
1D Compatibility (HY) -6400 + (ID) 3000
Total energy: -338867.0 ( -142.38 by residue)
QMean score : 0.017
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