Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNASNDSQSEDCE-TRQWLPPGESPAISSVMFSAGVLGNLIALALLARRWRGDVGCSAGRRSSLSLFHVLVTELVFTDLLGTCLISPVVLASYARNQTLVALAPESRACTYFAFAMTFFSLATMLMLFAMALERYLSIGHPYFYQRRVSRSGGLAVLPVIYAVSLLFCSLPLLDY-GQYVQYCPGTWC-------FIRHGRTAYLQLYATLLLLLIVSVLACNFSVILNLIRMHRRSRRSRCGPSLGSGRGGPG-------------------ARRRGERVSMAEETDHLILLAIMTITFAVCSLPFTIFAYMNETSSRKEKWDLQALRFLSINSIIDPWVFAILRPPVLRLMRSVLCCRISLRTQDATQTSCSTQSDASKQADL |
4XNV Chain:A ((38-382)) | ---------SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMK-----------PWSGISVYMFNLALADFL-YVLTLPALIFYYFNKTDWI---FGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAIS--PILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQ--------TPAMCAFNDRVYATYQ--VTRGLASLNSCVNPILYFLAGDTFRRR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232925 for 2273 contacts (-102.5/contact) +
2D Compatibility (PS) -32579 + (NN) -11846 + (LL) 1600
1D Compatibility (HY) -21600 + (ID) 3200
Total energy: -300550.0 ( -132.23 by residue)
QMean score : 0.274
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