Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADNLYLY----KGSVKITEMTLNLNEAKIIVYEDSGGNKYTLDASGISTLTNIDDIKLSDLLEGKVKFIYQKKDSNAIQIKGLGNIISTLLATQKAVDGESILAEE--VSKKPVVDTILKATDLVNLNKNIVETELEDKFVKKDASNLTDAVNQKA-FAEKILPAKDGQKSILVEKLGGLLGEPGAVYGDSNPKITAKDFLAEKASLVKTDGSNIVTQTDKGKALVEAILNAKEPISNKEVKIVETELAKTFVKTADLGTPAVAGKVLDAKDGQKSILVEKLGRFLDTTSTEYSNQTAKVFSGEKGTKPTAEEVVTKLLANNKKDLTDEVAQNPGLRAAVTSNSGLRGTVIDNLKGDTDFKTDITIQVDAKDPAFQGFVREIISQPSFEIPTSDDAPLSWDWI |
| 4COS Chain:A ((6-319)) | -RNDFYCWVCHREGQVLCCELCPRVYHAKCL--------RLTSEPEGDWFCPECEKITVAECIET------QSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAK----------KKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEI--EVCPECYLAACQK--------------RDNWFCE-------PCSN----------PHPLVWAKLKGFPFWPAKALRDKDG--QVDARFFGQ---HDRAWVPINNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFG--------------VFNYSPFRTPYTPNSQYQM-LLDP----------TNPSAGTAKIDQEKVKL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4COS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 41438 for 2226 contacts (18.6/contact) +
2D Compatibility (PS) -31328 + (NN) -4025 + (LL) 6636
1D Compatibility (HY) -14800 + (ID) 2650
Total energy: -4729.0 ( -2.12 by residue)
QMean score : 0.306
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