Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVFLNNATKKIEGEYHQSKETNAPVVLILHHHPQYGGSM-DSKMIHSIYTSFIDNNFSALKINFRGVGKSTGTFDKGIGELTDAAIAIDWLQEHNPSNVPIWIVGFSFGAWVA-MQL-TMRRPEIV-GFIALSLPATKYDFSFLSPCPVPGLIIQSSNDTISEESDVTELANRLINSVKSDHMEYHIIGDTNHFLRDKEEEV-TQIIDNYVKLRLNSAAISSQMVKKEIRIKEYA
2I3D Chain:A ((24-241))
-PEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGG-TMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAP---QPNTYDFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKL-KTQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEP-------------
General information:
TITO was launched using:
RESULT:
Template:
2I3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139636 for 1813 contacts (-77.0/contact) +
2D Compatibility (PS) -23271 + (NN) -12628 + (LL) 2372
1D Compatibility (HY) -13200 + (ID) 3850
Total energy: -190213.0 ( -104.92 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2I3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I3D-query.scw
PDB file :
Tito_Scwrl_2I3D.pdb
: