Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKNIEGQDFGVGLLFYNSGNPLTGVLKFIN---------FYDENNLVL-------QKDQRRNRQALLDRGRLFSNYLHIKQGWCLCHNVW---
1TBX Chain:A ((3-96))
STPFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTAIETYKQIKKRHHH
General information:
TITO was launched using:
RESULT:
Template:
1TBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10039 for 463 contacts (-21.7/contact) +
2D Compatibility (PS) -7209 + (NN) -1219 + (LL) 0
1D Compatibility (HY) -400 + (ID) 350
Total energy: -19217.0 ( -41.51 by residue)
QMean score : 0.019
(partial model without unconserved sides chains):
PDB file :
Tito_1TBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TBX-query.scw
PDB file :
Tito_Scwrl_1TBX.pdb
: