Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MQEVSNSFDEIKVFIEQKKEILKYIVSWLKEDKQENFLKEFEQIQIDFSEKAK---RLTSLA-------MKKLKILTIADLNLAVISQNQYMKISYKSVISRNSVHIMLIKKNSDNSFAFYDPNLWCSF
4DFC Chain:B ((128-250))
MASTVSQMVDNVLSQPEGKR--LMLLAPIIKERKGEH-TKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFK--VRLTQRLAESFETALELSGGTAVVADMDDPKA----EELLFSAN
General information:
TITO was launched using:
RESULT:
Template:
4DFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5518 for 745 contacts (-7.4/contact) +
2D Compatibility (PS) -11257 + (NN) 3686 + (LL) 1276
1D Compatibility (HY) -400 + (ID) 1050
Total energy: -13263.0 ( -17.80 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_4DFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DFC-query.scw
PDB file :
Tito_Scwrl_4DFC.pdb
: