Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFTLPELPYDKTALEPYISAKTLDFHYDKHHKGYLNKLNELIENTDYQNVKIEELIMKVHGNSDEVPVFNNAAQVWNHTFYWNSMKKSGGDKPKEDGLLAKKIQDDIGGFDKFHEEFFNHGIGQFGSGWVWLV-LERGKLKITKTPNADLPLIYDQV-PLLTMDVWEHAYYLDCQNRRIDYIKIFLDHLINWDFAEENLKKNT
3LJF Chain:C ((2-192))
--FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVCSSDGG-----VFNNAAQIWNHTFYWNSLSPNGGGAPT--GAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFWS-LVNWEFANANFA---
General information:
TITO was launched using:
RESULT:
Template:
3LJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121157 for 1498 contacts (-80.9/contact) +
2D Compatibility (PS) -19731 + (NN) -4916 + (LL) 288
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -170016.0 ( -113.50 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_3LJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LJF-query.scw
PDB file :
Tito_Scwrl_3LJF.pdb
: