Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNNPNIKLLYIRDLFAKECKEIEE-Y--CILGKKQHIQISPEEGKLLSLFIKIHKVRSIVEIGTLYGYSSICMAKALPEYGHIYTIENNPKHFKIAKKNFNAFNMSNKITLIVGNALEKLAEL---------------SAKAPYDMIFIDADKAGYPKYLDWAESYIKQDGLIVADNTLLLNTVFLKSPPKEVLEKSWRAMREFNYRLSDEKKYCSILIPTDEGMTIALKLT
2HNK Chain:A ((7-231))
---SLTESLEEYIFRNSVREPDSFLKLRKETGTL---NMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFG-PSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ----EPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKRL
General information:
TITO was launched using:
RESULT:
Template:
2HNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119897 for 1635 contacts (-73.3/contact) +
2D Compatibility (PS) -22242 + (NN) -9854 + (LL) 1380
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -166063.0 ( -101.57 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2HNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HNK-query.scw
PDB file :
Tito_Scwrl_2HNK.pdb
: