Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKAVVLLNLGGPDSLSAVRPFLFNLFYDKRIINLPNPFRFFLAKFISAKRENNARKIYEQIGGKSPILENTKMQAEALERELNRSVFCHPSSVTLGPRKENWIPVSRIGMTSKLTKVFICMRYWHPFANEVVKSVKQFDPDEVILLPLYPQYSTTTTLSSIENWQKNAKQYGIKCNTK--IIRHHYDNQDFIEAHANLITK---HYKLA--SEVGKPRVLFSAHSLPLSVIKKGDPYALQVEETVKLIVKKLHIKDLDWSICYQSKIGPVKWLEPSTESELLRAKADGVP-VVLLPISFVSEHSETLVELDMEYKTIIKDGYYF----RIPTLSTNSLFIKCLAGLCINHS |
2HRC Chain:B ((4-324)) | -KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP--IQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDE----------LSP---NTAP----------HKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEV---VILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HRC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148254 for 2550 contacts (-58.1/contact) +
2D Compatibility (PS) -33843 + (NN) -21697 + (LL) 1396
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -233848.0 ( -91.71 by residue)
QMean score : 0.538
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