Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYGTTILSIRKDKSVIVIGDGQVSLGHTVIKSGAKKVRRLSSDSVIAGFAGATADAFTLFERLESKLDKHPGQLMRACVELAKDWRMDKYLRKLEAMMIVADKSISLVITGTGDVLEP-EDGIAAIGSGGNFALSAAKALIDIKGISIEEIAKKAMKIAADICVYTNHNVVVEKIEG
1JJW Chain:B ((1-172))
---TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP-
General information:
TITO was launched using:
RESULT:
Template:
1JJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129516 for 1483 contacts (-87.3/contact) +
2D Compatibility (PS) -19526 + (NN) -14472 + (LL) 232
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -186532.0 ( -125.78 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1JJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJW-query.scw
PDB file :
Tito_Scwrl_1JJW.pdb
: