Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYAVCRMQKVKSAGLKGMQFHNQRERKSRTNDDIDHERTRENYDLKNDKNIDYNERVKEIIESQKTGTRKTRKDAVLVNELLVTSDRDFFEQLDPGEQKRFFEESYKLFSERYGKQNIAYATVHN--DEQTPHMHLGVVPMRDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVKKDEWTAYSDKVKSDLEVPAKRHMKSVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDNDRLKQHVRNLMSTD-----MAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSLIYESTKEFLKERTDGLKAFKNVFKGFVDKVKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL |
4P5W Chain:A ((31-394)) | --TKRADPAELRTIFLKYASIEKNGEFFMSPNDFVTRY-----LNIFSQPNPKTVELLSGVVDQTKDGL-ISFQEFVAFESVLCAPD-------------ALFMVAFQLF-DKAGKGEVTFEDVKQVFGQTTIHQHIP--------------FN-----WDSEFVQLHFGKER-----------KRHLTYAEFTQFLLEIQLEHA-KQAFVQRDN--ARTGRVT-------AIDFRDIMVTIRPHVLTPFVEECLVAAAGGTTSHQVSFSYFNGFNSLLNNMELIRKIYSTLAGTRKDVEVTKEEFVLAAQKFGQVTPMEVDILFQLADLYEPRGRMT-------------LADIERIAPPNPD----HVGGYKLAVATFAGIENKF------------------------------------GLYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 81690 for 2319 contacts (35.2/contact) +
2D Compatibility (PS) -31895 + (NN) -11653 + (LL) 6988
1D Compatibility (HY) -12400 + (ID) 2750
Total energy: 29980.0 ( 12.93 by residue)
QMean score : 0.285
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