Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3UXM Chain:C ((4-207))
---FVTLEGPEGA---TNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAA-----LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERL
General information:
TITO was launched using:
RESULT:
Template:
3UXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70256 for 1514 contacts (-46.4/contact) +
2D Compatibility (PS) -21098 + (NN) -10541 + (LL) 248
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: -115347.0 ( -76.19 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3UXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UXM-query.scw
PDB file :
Tito_Scwrl_3UXM.pdb
: