Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLSAAYEPTSAVNVS-QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTH--AVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGEQRIN-G----KKYYVENDLYDVLPSDFSKKDYKLVVEDGKVHADYPREFINKDYGPPTVEVHQPIIQKANTVAKSMWEEHPLFTIIGGACLVAGLALIVHMIINRLFRKRK |
3MFD Chain:A ((4-281)) | -------------------------------------------AIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIES---G--KMDQTVTVSANAVRTE----GSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDH-------------ENHYSTAYDMAILTKYAMKL-KDYQKISGTKIYKAETMESVWKNKNKLLTM---LYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDP---------NDWDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFIKRDITYLLTEEEK----------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -55927 for 2364 contacts (-23.7/contact) +
2D Compatibility (PS) -28806 + (NN) -11135 + (LL) 11820
1D Compatibility (HY) -10000 + (ID) 3650
Total energy: -97698.0 ( -41.33 by residue)
QMean score : 0.395
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