Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMS------SA-SDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDD---IISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEA--RIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYD----L-KSF-EDFVIASPD-------D--LVFDDIAFGSSQVIEQNKW-QHFLD-QDIQNYESGRDYL-PEVLTSQLSVALAYGLLDIIEIFNDLLARYD--EDEANHEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD |
| 2J4D Chain:A ((40-497)) | GVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVD--VERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFV---GGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRL-------------MYMDTVVPLKHG------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196466 for 3614 contacts (-54.4/contact) +
2D Compatibility (PS) -44761 + (NN) -14440 + (LL) 2308
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -277309.0 ( -76.73 by residue)
QMean score : 0.401
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