Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGP---VTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
4N6A Chain:B ((153-254))
-------------------------------------------------------VDIHPAARIGKGILFD--HATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARL-----
General information:
TITO was launched using:
RESULT:
Template:
4N6A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92982 for 754 contacts (-123.3/contact) +
2D Compatibility (PS) -11125 + (NN) -4795 + (LL) 6248
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -111404.0 ( -147.75 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_4N6A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6A-query.scw
PDB file :
Tito_Scwrl_4N6A.pdb
: