Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMY-KGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1SYB Chain:A ((6-142))
------------------------------------------------------------------------------------KLHKEPATLIKAIDGDTVKLMSSNGSPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
1SYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45646 for 1062 contacts (-43.0/contact) +
2D Compatibility (PS) -14594 + (NN) -4496 + (LL) 5904
1D Compatibility (HY) -14800 + (ID) 6550
Total energy: -80182.0 ( -75.50 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1SYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYB-query.scw
PDB file :
Tito_Scwrl_1SYB.pdb
: