Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3LMT Chain:F ((1-159))
MRVVIQRVKGAILSVRK----KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3LMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58002 for 1009 contacts (-57.5/contact) +
2D Compatibility (PS) -15808 + (NN) -7393 + (LL) 288
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -98765.0 ( -97.88 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3LMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMT-query.scw
PDB file :
Tito_Scwrl_3LMT.pdb
: