Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MRKRARIIYNPTSGKELFKRELPDA-LIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPK-----LGVIPMGTVNDFGRALHI---------PNDIMGALDVIIEGHSTKVDIGKMN------NRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYD--------------------------GNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKS-NLAELGHIMTLASRGEHTKH--PKVIYEKAKAINISSFT-DLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE |
| 3VZD Chain:A ((3-361)) | MGSGVLPRPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNEDLLTNCTLLLCRRLLSPMNLLSLHTASGLRLFSVLSLAWG---FIADVDLESEKYRRLGEMRFTLGTFLRLAALRTYRGRLAYLPVGRVGSQGPVDAHLVPLEEPVPSHWTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAMEKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSG--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144308 for 2471 contacts (-58.4/contact) +
2D Compatibility (PS) -30557 + (NN) -3170 + (LL) 1228
1D Compatibility (HY) -12800 + (ID) 2700
Total energy: -192307.0 ( -77.83 by residue)
QMean score : 0.380
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