Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYF-LDMADQVIVGTQEGVKILEK
3KWM Chain:C ((12-219))
------LKKLAATEAAKSITTEITLGVGTGSTVGFLI---EELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEVIPMARSYIARQIVKLGGQPVYRE-----QTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDS------
General information:
TITO was launched using:
RESULT:
Template:
3KWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115375 for 1828 contacts (-63.1/contact) +
2D Compatibility (PS) -22628 + (NN) -8883 + (LL) 2024
1D Compatibility (HY) -13600 + (ID) 4100
Total energy: -162562.0 ( -88.93 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_3KWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KWM-query.scw
PDB file :
Tito_Scwrl_3KWM.pdb
: