Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKG--ERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGM------RYYGFFDFASSYYKYYTYN---------DYGMRDARKGSQ-----SFMFGYG------AGTDVLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNYYFKDLAEEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGTT----------YRFTFHRPYAFYWRYIVSF------- |
| 4LDV Chain:A ((16-356)) | SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQRRAETDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKT-----LTASDTSTHG-GFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMPSSVISSHSMHIGVLATAAHAITTGTIFSVFYK---------PRTSRSEFIVSVNRYLEAKTQKLSVGMRF-KMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51367 for 1813 contacts (-28.3/contact) +
2D Compatibility (PS) -28000 + (NN) -8497 + (LL) 608
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -92456.0 ( -51.00 by residue)
QMean score : 0.063
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