Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFD---NHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMC-----RLFLA-SLFPQYDKIIMFDADTLFLN-DVSESFFIPLDSYYFGAAKDFSSPKSLK----HFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLW---RADKLEEHLLNLTHQKGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSK-IFKRLKERFLNS |
| 3P4G Chain:A ((23-323)) | HSFDHYIGSAFDASNNNVAVTGNVS--ATLNVLAGD------------------------DKVSIDGN--VEDVLVA----ANVAVLDMGTGN-DQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLD--AGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLL----DTGDD------------SLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRV--QSQVWAEANIS------------LGTGDDVLIVEHELHG------TVAGNEGDDSIYLK--FYT------KEQYNNNSDLRNRVANFE---------------HIRVSDGVVKGSPADFADY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3P4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171860 for 2512 contacts (-68.4/contact) +
2D Compatibility (PS) -28561 + (NN) 5580 + (LL) 6788
1D Compatibility (HY) -10800 + (ID) 3150
Total energy: -202003.0 ( -80.42 by residue)
QMean score : 0.171
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