Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKIN-HLDFKTFKDALSLGKGMMPKY--NLNLEEIQAIYLYITSLGHKDERKDPSKP
1LS9 Chain:A ((3-89))
-----------------------AELLADGKKVFAG----NCAACHLGGNNSVLADKTLK----KDAIEKYLEGGLTLEAIKYQVNNGKGAMPAWADRLDEDDIEAVSNYVYDQAVNSKW------
General information:
TITO was launched using:
RESULT:
Template:
1LS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36810 for 597 contacts (-61.7/contact) +
2D Compatibility (PS) -8825 + (NN) -2464 + (LL) 2848
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -47701.0 ( -79.90 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1LS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LS9-query.scw
PDB file :
Tito_Scwrl_1LS9.pdb
: