Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------MQEILIPLKEKSYKVFLGELPEIKLK-QKALIISDSIVAGLHLPYLLERLNA--------LEVRVCVIESGEKYKNFHSLERILNNAFE--MQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLET-------------KDLKDCLEEVIFQSVNIKAQVVVQDEKERNIRAGLNYGHTFGMLIENETNYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFNYQITDIQK-----------FYERLFLDKKSENQTLKFILPKGVGAFEI--ASHIPKETILKVLEKWH |
1DQS Chain:A ((4-391)) | PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRRRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DQS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223635 for 2923 contacts (-76.5/contact) +
2D Compatibility (PS) -35310 + (NN) -2043 + (LL) 472
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -287516.0 ( -98.36 by residue)
QMean score : 0.500
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