Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
3HD2 Chain:A ((5-128))
--------------------------IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAE-RWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDG
General information:
TITO was launched using:
RESULT:
Template:
3HD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75406 for 853 contacts (-88.4/contact) +
2D Compatibility (PS) -13092 + (NN) -5787 + (LL) 2444
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -100641.0 ( -117.98 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3HD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD2-query.scw
PDB file :
Tito_Scwrl_3HD2.pdb
: