Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQTLFKEITSKCYVNGNEMKENSSNVLDQYFTKPSVALKCFQKACEVIKKYENPDDFIFLEPSAGDGVFYDLFPK----------------------------------------------DRRIGIDIEPKRD----------------GFIQCDFLNYKL--PVHQKVICLGNPPFGHRGV-------MALEFINHAR----NCDFVCFILPMFFESQGKGSIKYRVKGLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYQSGIAVVFTSADKVLNAKLKKLFQEIDWTKYASLATNSCYHLGKSHIFQALHDHLDSLKGN |
| 3V97 Chain:A ((169-350)) | --------------------------AGIAPIKETLAAAIVMRSGWQ-------PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGE---SEPALIALHSLL-GRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESMVAEDYTNRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAHKARQRLFDIIAATISVLGIAPNKLVLKTREEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V97.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50167 for 701 contacts (-71.6/contact) +
2D Compatibility (PS) -11107 + (NN) -3395 + (LL) 2244
1D Compatibility (HY) 3200 + (ID) 800
Total energy: -60025.0 ( -85.63 by residue)
QMean score : 0.366
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