Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEDYAISLEEV---N--FNDFIVVDVRELDEYEELHLPNATLISVN-DQEKLADFLSQHKDQKVLLHCRAGRRALDAAKSMHELGYT-PYYLEGNVYDFEKYGFRMVYDDTSLSDKKN
1YT8 Chain:A ((6-115))
---IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV-PRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSKAFG
General information:
TITO was launched using:
RESULT:
Template:
1YT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46572 for 760 contacts (-61.3/contact) +
2D Compatibility (PS) -11445 + (NN) -4475 + (LL) 460
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -64582.0 ( -84.98 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1YT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT8-query.scw
PDB file :
Tito_Scwrl_1YT8.pdb
: