Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
3DUH Chain:C ((1-170))
----LRAVPGGSSPAWTQCQQLSQ--KLCTLAWSAHND----------VPHIQCGDGCD---PQGLRDNSQFCLQRIHQGLIFYEKLLGSDIFTGEPSPVGQLHASLLGLSQLLQPEG--HHWETWQRLLLRFKILRSLQAFVAVAARVFAHGAATLS---
General information:
TITO was launched using:
RESULT:
Template:
3DUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 20921 for 997 contacts (21.0/contact) +
2D Compatibility (PS) -14230 + (NN) -10571 + (LL) 1404
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -8876.0 ( -8.90 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_3DUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUH-query.scw
PDB file :
Tito_Scwrl_3DUH.pdb
: