Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------LAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGEQDNRRGKKLRNGDVILVPGVGKVKIEQGK--------------------
2JQJ Chain:A ((19-159))
KRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY
General information:
TITO was launched using:
RESULT:
Template:
2JQJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10847 for 413 contacts (-26.3/contact) +
2D Compatibility (PS) -8045 + (NN) -1224 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -22366.0 ( -54.15 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_2JQJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JQJ-query.scw
PDB file :
Tito_Scwrl_2JQJ.pdb
: