Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTFFSKWGKWILVLGLVFSVFSVSTAGQAAAKETVINKQMVTTASLNVRSTNSTSGKVIGWLKNNTKFKAIAKTSNNWYRFSFKGKNGYVSGKYVKAATATPTPKPPTPKIVQMNVPLIVQRPQLPTGCEITNIAMMLRYAGKNVDKVKLAKEMKR-------HKSNPNYGFVGNPFS--KSGWTIYPPALVNQVKKYTGS-AKNMTGTNLAGIKNQLNKKRPVVAWV--------------------SKFHGFSVHAITITGYDKNNFYYNDSWSGQKNARISQSYFNTCWSKQAKRAISY----- |
3ERV Chain:A ((29-228)) | ------------------------------------------------------------------------------------------------------------DEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKRSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ERV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69064 for 1340 contacts (-51.5/contact) +
2D Compatibility (PS) -18057 + (NN) -9808 + (LL) 6304
1D Compatibility (HY) -14800 + (ID) 3000
Total energy: -108425.0 ( -80.91 by residue)
QMean score : 0.546
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