Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTTVVRALHELVRAGILARYQGKGTYVSKSIINEEVIFNEYTTVPNGRFNRKTKITNEHTKVVAINEIQ-DARIAKKLQIPPENMIVHFQRIRLIDDLPWTVQNNYMAKSNLINVDLTNFEKFNSLSEVIKELYGINILHEAMKERIEVEFPVKDKNNFKLLEIDTELPLYHIERITYVPEGQPYEYIESYLRHNFYSIEIEKKKQ
3EDP Chain:A ((7-235))
-KKPLFEVIASKIKDSINRDEYKTG--MPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQN--ILEMTGVMKN----------LKKDIKDFYIRKAGKFYAEIFGMKENELVYSIKFVQKS-EHGATLDRLILPLGLYPDLQAKD-FQIINIIELVNS-GKYKL--FELEQELQ--LILAGNEQIKNMHLNENDPVFKLSSVFYAENDMPIAIQYHYEDAESTKYVVDF---
General information:
TITO was launched using:
RESULT:
Template:
3EDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62981 for 1608 contacts (-39.2/contact) +
2D Compatibility (PS) -23459 + (NN) -5295 + (LL) 2376
1D Compatibility (HY) -14400 + (ID) 1700
Total energy: -105459.0 ( -65.58 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3EDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EDP-query.scw
PDB file :
Tito_Scwrl_3EDP.pdb
: