Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHP-----EVKVVSGLSLGLIIPLSLGESLEEAML----GAKDNIQFVEQKASHTIVSDDGEEED
4FPR Chain:A ((1-130))
AYVCREASISGEIRYPQ---GTC------------PTKTEALNDCNKVTKGLIDFSQSHQRAWGIDMTAKVQCAPCKTTDPWDVVLCTCKITAHRYREFVPKIPYSSFSSAPGVIFRQETGLDHDPEWVVNMKARTRGCDHHHHH-
General information:
TITO was launched using:
RESULT:
Template:
4FPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46747 for 730 contacts (-64.0/contact) +
2D Compatibility (PS) -12034 + (NN) 2696 + (LL) 1160
1D Compatibility (HY) 2000 + (ID) 1000
Total energy: -53925.0 ( -73.87 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_4FPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FPR-query.scw
PDB file :
Tito_Scwrl_4FPR.pdb
: