Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKPSMKRQIAQTGIIHRPLPIETEHALETL-AKKKQVLSSRTLFSSKQHVSLEFTHQGAGDFTISGQDEIKLSSPVVMPHWPAGAPDDGDYTNFGNVTISASIGNEDWSG-FNRVRIQVFPDFPGVTNPYLMISFKNDGTVKVPDIYGREGVHGVNLINHEWNDVIFEIEGLPRDRMTEMSFSYYLNGPERLTAGTMELFINEIKLEQISEPEISKGWLPQNNTLIYSHNGYSKDMPKVAFCANKHAATTFTIHDKETDKVVFTGKSYQNATETGNFVILDFSDLQTVGEYYLKFADMQTEIFQIGTSEVIWESSIWKSLNF--IFCERCGCPVFGKHTTCHADIIAEHDGKQLSFNGGWHDAGDVSQQLIQTAEVTMALYEMAASLPEKEETLRMRLLEEGEWGLDFILKTRFGDGFRATSAGMTRWTDGLVGGMDDAIARVHNQAYENFYCAGIEAYIGSQIADNATMQNHLLRIAEEDLL--FAIKELEKHGTSQKPIFWEHT-YQTSESLYYATASWAASMVYQLTNKEIYAEKAAEWLDLMLEAQEKAGIRDSETSELYKG-------FFYRDKSHKVIQHFNHQAREHLYLLALEAALETQPSHAEKQTWLQAVEMYGDYLKKVTRFTKPYPLIPAGLY-KKDEYLDEASFHLQHLLIDERAIEEYQLQFEQGIKINDEVALRKFPIWFSFRGNNAILLSAGKAASIAGKILKDKALLDIAEGQLQWVIGMNPFGQSMMHGEGYRYAQQYSVLNGEITGEIPVGME-TFRNEDEPYWPEFNNATY--KEVWVGNAGKWMSI-VADLNKITGKS--------------------------- |
| 3V97 Chain:A ((1-703)) | ---AMNSLFASTA---RGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWS------------RLASRIMLPL--------GECKVYSDLDLYLGVQAINWTEMFN----------PGAT---FAVHFSGLNDTIRNSQYGAMKVK--DAIVDAFTRKNLPRPNVDRDA-PDIRVNVWLHKE------TASIALD-----------LSGDGLHLRG---YRDRAGIAPI-------------------KETLAAAIVMRSGWQP----GTPLLDP---------------------MCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHD--------------------EAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLA-------GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGESEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESMV----------------AEDYTNRLRKNLKKFEKWARQEGI---ECYRLYDADLPEYNVAVDRYADWVVVQEYAHKARQRLFDII--AATISVLGIAPNKLVLKTREEKGEF-LEVTEYN-------AHLWVNLTDYLDTG------LFLDHRIARRMLGQMSKG---------KDFLNLFSYTGSATVHAGLGGARSTTT-VDMSRTYLEWAERNLRL-NGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNCWLITAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V97.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68836 for 5086 contacts (-13.5/contact) +
2D Compatibility (PS) -66125 + (NN) -10548 + (LL) 12248
1D Compatibility (HY) -24000 + (ID) 5800
Total energy: -163061.0 ( -32.06 by residue)
QMean score : 0.140
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