Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------MRKVRISVRRLVEFVRRSGSIDNR-MTSSDRALEGTKIHQLLQKEAGEEYAAEVRLNLDRIVDGIAFSLDGRADGII--NGRMIDEIKTTETPMDEITE--NFRPLH-----WAQLICYGFMLAEKSDLAE-VTLQLTYY---------QVVDKEVKQFQR--------------VMSREEL-------------SVFVDDLLSQYAIWAKASAAWEMKRN-KTIQELTFPYDSYRS-----------------GQRELAIAVYR-----TISSEESLF-----CEAPTGIGKTMSTL------------FPGIKAMGEG-KTDKLFYFTAK----TITRQVAEDALDEMRRKGLAARSVTITAKDKICFL------DERKCE-PDHCQFARGYYDRLNEALFDMLQSEEAITR-----------QVVESYA--RKYTLCPFEL--------------------------SLDVALFCDVIVCDYNYLFDP---------VVYLKRFFAEGPGKYTF------------------LVDEVHNLVDRARSMYSATLKKSAVMQVKRGLDAKNNKRLLNAINVMNKDMIALNKKLKDLDGTIYVQKNEL----IDWNESVLKFT--------------FVAKEWLPQNTQSEIQADVLELYFESLRYV-AIADFYDDR---YVTQVTKSHG---DLEIKQVCL--DPSFLLSERLKLGSSSVLFSATLRPIDYYTNLLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYAL-----VSGENGNYLFFFPS---------------FLYLQKVYDLFKEKYPNI--RLQKQETAMDEERREHFLERFQAENVE----TLIGFCVL------GGVFSEGVDLR-GNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVLQAVGRVIRGESD--RGVVLLIEERFSADRYRALFPTHWNHAKTVKSTDDISRE---------VAGFWRNS------------------------------------------------ |
| 4M5D Chain:A ((81-1237)) | TATESYDIHIARETAELFKSNIFKLQIDELLEQVKLKQKHVLKVEKFLHKLYDILQEIPDWEEKSLAEVDSFFKNKIVSVPFVDPKPIPQNTNYKFNYKKPDISLIGSFALKA-GIYQPNGSSIDTLLTMPKELFEKKDFLNFRCLHKRSVYLAYLTHHLLILLKKDKLDSFLQLEYSYFDNDPLLPILRISCSKDYNFYKTRFSINLLIGFPYKVFEPKKLLPNRNCIRILPATPLYNFSVLSSSTHENYLKYLYKTKKQTESFVEATVLGRLWLQQRGFSSNMSHSGSLGGFGTFEFTILMAALLNGGGINSNKILLHGFSSYQLFKGVIKYLATMDLCHDGHLQFHSNPASKYIDEGFQTPTLFDKSTKVNILTKMTVSSYQILKEYAGETLRMLNNVVQDQFSNIFLTNISRFDNLKYDLCYDVQLPLGKYNNLETSLAATFGSMERVKFITLENFLAHKITNVARYALGDRIKYIQIEMVGQKSDFPITKRKVYSNTGGNHFNFDFVRVKLIVNPSECDKLVTKGPAHSETMSTEAAVFKNFWGIKSSLRRFKDGSITHCCVWSTSSSEPIISSIVNFALQKHVSKKAQISNETIKKFHNFLPLPNLPSSAKTSVLNLSSFFNLKKSFDDLYKIIFQMKLPLSVKSILPVGSAFRYTSLCQPVPFAYSDPDFFQDVILEFETSPKWPDEITSLEKAKTAFLLKIQEELSANSSTYRSFFSRDESIPYNLEIVTLNILTPEGYGFKFRVLTERDEILY---LRAIANARNELKPELEATFLKFTAKYLASVRHTRTLENISHSYQFYSPVVRLFKRWLDTHLLLGHITDELAELIAIKPFVDPAPYFIPGSLENGFLKVLKFISQWNWKDDPLILDLVKPEERLTLAQYKGIQMNFTNLRNSDPNGTHLQFFVASKNDPSGILYSSGIPLPIATRLTALAKVAVNLLQTHGLNQQTINLLFTPGLKDYDFVVDLRTPIGLKSSCG-ILSAPSNFPENLNDLSEKMDPTYQLVKYLNLKYKNSLILSSRKYIGVNGGEKGDKNVITGLIKPLFKGAHKFRVNLDCNVKPVDDENVILNKEAIFHEIAAFGNDMVINFETD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115262 for 5260 contacts (-21.9/contact) +
2D Compatibility (PS) -80153 + (NN) -4484 + (LL) 192
1D Compatibility (HY) -41200 + (ID) 7400
Total energy: -248307.0 ( -47.21 by residue)
QMean score : 0.234
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