Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MALNIEEIIASVKEA-----SVLELNDLV--KAIEEEFGVTAAAPVAVAAAGGAAAEQTEFTVELASAGDSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGIAKDEAEEIKAKLEEVGANVEVK
1YOZ Chain:A ((9-124))
GHMLYINSFLDRMGEIIRGEKSVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQ---------LSIHFERLKEFAESKGE---KKLDPEVINEIALYIDRVEKEV---
General information:
TITO was launched using:
RESULT:
Template:
1YOZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9888 for 722 contacts (-13.7/contact) +
2D Compatibility (PS) -11457 + (NN) -4595 + (LL) 2060
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -30930.0 ( -42.84 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1YOZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOZ-query.scw
PDB file :
Tito_Scwrl_1YOZ.pdb
: