Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKNIMLVCNAGMSTGMLAKKIEAASGN---TLNVTAYSESEYTDYL-DGVDLVLIGPQIRFLMPQ-IKQAVS---VPVHAIS-PVKYGIMDGKGVYEDIQKLIGG
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD-IMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ-
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62787 for 700 contacts (-89.7/contact) +
2D Compatibility (PS) -10025 + (NN) -1857 + (LL) -80
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -77749.0 ( -111.07 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: