Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQ-HLIIKGVHPSPLAASRGFFGS-KPFSKTNAFLEEHERKPIDWDLNEQ
1UDH Chain:A ((32-244))
----WRPLMEPELANPLTAHLLAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR--PDPRVHCVLKFSHPSPL--SKVPFGTCQHFLVANRYLETRSISPIDWSV---
General information:
TITO was launched using:
RESULT:
Template:
1UDH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102638 for 1649 contacts (-62.2/contact) +
2D Compatibility (PS) -22661 + (NN) -13823 + (LL) 980
1D Compatibility (HY) -20400 + (ID) 4500
Total energy: -163042.0 ( -98.87 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1UDH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDH-query.scw
PDB file :
Tito_Scwrl_1UDH.pdb
: