Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVDRYEIIVINDNSSDNSAELLAAIQAKNPTRFLKIINT----DNITGGKGKSNALNIGFAESRGELVAIYDADNTP-ERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRFINIETLSFQWMAQAGRWALFKLCTIPGTNFIVRRSLLEEIGGWDVKAVAEDTEISFRIY-MMGYR-IKFQAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAAYGFFIFLKDTVLKRETKWYKTERF |
| 3CKJ Chain:A ((43-268)) | -------------------------------------------AAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVAAG-------ARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRP----------GRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSV-PFAPG-YGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPL----------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110866 for 1633 contacts (-67.9/contact) +
2D Compatibility (PS) -22279 + (NN) -8200 + (LL) 20928
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -130817.0 ( -80.11 by residue)
QMean score : 0.397
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